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The mythology of The X-Files, sometimes referred to as its "mytharc" by the show's staff and fans, follows the quest of FBI Special Agents Fox Mulder (David Duchovny), a believer in supernatural phenomena, and Dana Scully (Gillian Anderson), his skeptical partner. Their boss, FBI Assistant Director Walter Skinner, was also often involved. Beginning with season 8, another skeptic named John Doggett, and Monica Reyes, a believer like Mulder, were also introduced. The overarching story, which spans events as early as the 1940s, is built around a government conspiracy to hide the truth about alien existence and their doomsday plan. Not all episodes advanced the mythology plot, but those that did were often set up by Mulder or Scully via an opening monologue. Most mythological elements in The X-Files relate to extraterrestrial beings, referred to by the writers as "Colonists", whose primary goal is to colonize Earth. Late in the series, this was revealed to have been planned for the year 2012. Episodes This list of mythology episodes was originally taken from official sources, The X-Files Mythology range of DVDs and the book The Complete X-Files: Behind the Series, the Myths and the Movies. Chronology Season 1 FBI Special Agent Fox Mulder (David Duchovny) has made a name for himself, "Spooky Mulder," working on X-Files—unexplained cases which may be paranormal in origin. He is appointed a partner in these investigations—Dana Scully (Gillian Anderson)—with his superiors hoping that she will be able to debunk and discredit his work. Their first case together is the investigation of possible abductions in Oregon, which falters when their evidence is destroyed in a fire. A later case, involving the disappearance of a United States Air Force test pilot, sees the introduction of secretive informant Deep Throat (Jerry Hardin), who continues to provide the agents sensitive information. This help is supplemented by conspiracy theorist group The Lone Gunmen, who are contacted for help in a further abduction case. Deep Throat is killed, however, when he helps the agents uncover details of a government human cloning program, and the X-Files unit is closed shortly thereafter. Season 2 Unable to continue his work with Scully, Mulder obtains information about possible extraterrestrial contact in Puerto Rico, finding that the SETI program at the Arecibo Observatory is being forcibly closed. Although the pair are allowed to resume their work, Scully is later kidnapped by an unhinged multiple alien abductee, Duane Barry. Barry takes Scully to a hilltop where she is then abducted, presumably by aliens. She is found comatose at a later date, having mysteriously arrived at a hospital, and recovers several days later. Mulder receives a call from his father, who informs him that his sister Samantha (Megan Leitch), who had been abducted as a child, has returned. Samantha is being pursued by a shapeshifting bounty hunter, who is assassinating human clones. Samantha is killed, although it is revealed that she was simply one of a number of clones, produced using alien tissue to create an alien-human hybrid. The Lone Gunmen contact Mulder and Scully about a successful attempt by a friend of theirs to hack the United States Department of Defense computer system. The hacker, Kenneth Soona (Bernie Coulson), is able to give Mulder the downloaded information on a digital cassette. Soona is subsequently assassinated, and the downloaded files are found to be written in Navajo. Contacting Albert Hosteen (Floyd Red Crow Westerman)—a Navajo man capable of translating the files—Mulder is shown a box-car full of what appear to be alien corpses. He is trapped in the box-car by the series' antagonist, The Smoking Man (William B. Davis), and left for dead after it is destroyed. Season 3 Mulder is later found and nursed back to health by Hosteen. Meanwhile, Scully investigates the possible involvement of the smallpox eradication program in human genetic experimentation, discovering that a Nazi scientist who defected during Operation Paperclip has been conducting human experimentation to create alien-human hybrids. Dana's sister Melissa (Melinda McGraw) is shot by assassins who mistake her for Dana, and dies in the hospital. Investigating evidence of an alien autopsy, Mulder infiltrates a secretive government train carriage carrying an alien-human hybrid being experimented on by Japanese scientists. Mulder is almost killed by a Syndicate operative guarding the hybrid, but is saved by his informant X (Steven Williams). X had been tipped off about Mulder's activities by Scully. Scully, meanwhile, meets a group of women with abduction experiences similar to her own, and meets another member of the Syndicate known as the First Elder (Don S. Williams). The First Elder claims that during Scully's abduction she was placed on a similar train car and experimented upon by the Japanese scientists. The crew of a French salvage ship trying to raise a World War II-era submarine from the sea floor are stricken with massive radiation burns—except for one man, who has been infected with a parasitic black oil discovered on the submarine. The black oil, controlling the crewman's body, passes into the crewman's wife and uses her to travel to Hong Kong in pursuit of a middleman selling government secrets. Mulder is after the same man. After Mulder catches Alex Krycek (Nicholas Lea) in Hong Kong, the black oil passes itself to Krycek. Scully determines that the submarine had been involved in discovering the black oil on the sea floor during World War II, under the guise of finding a sunken fighter plane. The infected Krycek makes his way to a missile silo used to hide a UFO, and the black oil escapes his body to board the craft. Meanwhile, Scully has tracked down Luis Cardinal, the man responsible for killing her sister. Season 4 When the Syndicate suspect that a member is passing information to Mulder and Scully, they organise a canary trap to find the leak, using information about the safety of Mulder's mother as bait. X's role as an informant is discovered, and he is shot dead, although he is able to pass along the name of another informant who can be of use to Mulder—Marita Covarrubias (Laurie Holden), the Special Representative to the Secretary-General of the United Nations. Mulder seeks Covarrubias' aid when he attempts to reach the site of the Tunguska event, in Russia, to investigate the source of a further black oil contamination. While there, Mulder is held in a gulag and used—successfully—as a test subject for a black-oil vaccine. He escapes and is able to return to America, having found out that Krycek is working with the Russians. Scully, who has been diagnosed with cancer, is unsure of her future with the FBI. Mulder is convinced that her condition is a result of her earlier abduction, and is prepared to make a deal with the Syndicate to find a cure. He is dissuaded by Walter Skinner (Mitch Pileggi), who secretly m.... Discover the Cassandra Medcalf popular books. Find the top 100 most popular Cassandra Medcalf books.